Intercellular Coupling Confers Robustness against Mutations in the SCN Circadian Clock Network

A. C. Liu, D. K. Welsh, C. H. Ko, H. G. Tran, E. E. Zhang, A. A. Priest, E. D. Buhr, O. Singer, K. Meeker, I. M. Verma, F. J. Doyle III, J. S. Takahashi, and S. A. Kay, “Intercellular Coupling Confers Robustness against Mutations in the SCN Circadian Clock Network,” Cell, vol. 129, pp. 605–616, May 2007.[DOI]

Phase Sensitivity Analysis of Circadian Rhythm Entrainment

R. Gunawan and F. J. Doyle III, “Phase Sensitivity Analysis of Circadian Rhythm Entrainment,” J Biol Rhythms, vol. 22, pp. 180–194, April 2007.[DOI]

Neuronal Modeling of the Baroreceptor Reflex with Applications in Process Modeling and Control

F.J. Doyle III, M.A. Henson, B.A. Ogunnaike, J.S. Schwaber, and I. Rybak, “Neuronal Modeling of the Baroreceptor Reflex with Applications in Process Modeling and Control”, in Neural Networks for Control, D.L. Elliott, Editor, Springer Verlag, pp. 89-130, 1997.

Calculating the insulin to carbohydrate ratio using the hyperinsulinaemic-euglycaemic clamp?-?a novel use for a proven technique

W. C. Bevier, H. Zisser, C. C. Palerm, D. A. Finan, D. E. Seborg, F. J. Doyle III, A. O. Wollitzer, Jovanovi, ccaron, and Lois, “Calculating the insulin to carbohydrate ratio using the hyperinsulinaemic-euglycaemic clamp?-?a novel use for a proven technique,” Diabetes/Metabolism Research and Reviews, vol. 23, pp. 472–478, 2007.[DOI]

Quantitative performance metrics for robustness in circadian rhythms

N. Bagheri, J. Stelling, and F. J. Doyle III, “Quantitative performance metrics for robustness in circadian rhythms,” Bioinformatics, vol. 23, pp. 358–364, February 2007.[DOI]

Circadian phase entrainment via nonlinear model predictive control

N. Bagheri, J. Stelling, and F. J. Doyle III, “Circadian phase entrainment via nonlinear model predictive control,” International Journal of Robust and Nonlinear Control, vol. 17, pp. 1555–1571, 2007.[DOI]

Nonlinear inferential multi-rate control of Kappa number at multiple locations in a continuous pulp digester

N. Padhiyar, A. Gupta, A. Gautam, S. Bhartiya, F. J. Doyle III, S. Dash, and S. Gaikwad, “Nonlinear inferential multi-rate control of Kappa number at multiple locations in a continuous pulp digester,” Journal of Process Control, vol. 16, pp. 1037–1053, December 2006.[DOI]

Complexity and Robustness of Cellular Systems

J. Stelling, U. Sauer, F.J. Doyle III, and J. Doyle, “Complexity and Robustness of Cellular Systems”, in System Modeling in Cellular Biology, Z. Szallasi, V.Periwal and J. Stelling, Editors, Elsevier, 2005.

Methods to Identify Cellular Architecture and Dynamics from Experimental Data

R. Gunawan, K. Gadkar, and F.J. Doyle III, “Methods to Identify Cellular Architecture and Dynamics from Experimental Data”, in System Modeling in Cellular Biology, Z. Szallasi, V.Periwal and J. Stelling, Editors, MIT Press, 2005.